{
  "_id": "6a115e01acfb0bcc41ceca4d",
  "Package": "diffval",
  "Title": "Vegetation Patterns",
  "Version": "1.2.0.9001",
  "Authors@R": "c(\nperson(\"Tiago\", \"Monteiro-Henriques\", , \"tmh.dev@icloud.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-4206-0699\")),\nperson(\"Jorge Orestes\", \"Cerdeira\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-3814-7660\")),\nperson(\"Fundação para a Ciência e a Tecnologia, Portugal\", role = \"fnd\",\ncomment = \"<https://www.fct.pt/>\")\n)",
  "Description": "Find, visualize and explore patterns of differential taxa\nin vegetation data (namely in a phytosociological table), using\nthe Differential Value (DiffVal). Patterns are searched through\nmathematical optimization algorithms. Ultimately, Total\nDifferential Value (TDV) optimization aims at obtaining\nclassifications of vegetation data based on differential taxa,\nas in the traditional geobotanical approach (Monteiro-Henriques\n2025, <doi:10.3897/VCS.140466>). The Gurobi optimizer, as well\nas the R package 'gurobi', can be installed from\n<https://www.gurobi.com/products/gurobi-optimizer/>.  The\nuseful vignette Gurobi Installation Guide, from package\n'prioritizr', can be found here:\n<https://prioritizr.net/articles/gurobi_installation_guide.html>.",
  "License": "GPL (>= 3)",
  "URL": "https://point-veg.gitlab.io/diffval/",
  "BugReports": "https://gitlab.com/point-veg/diffval/-/issues",
  "Encoding": "UTF-8",
  "Language": "en-GB",
  "LazyData": "true",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "Repository": "https://tiagomonteirohenriques.r-universe.dev",
  "Date/Publication": "2025-11-24 12:30:47 UTC",
  "RemoteUrl": "https://gitlab.com/point-veg/diffval",
  "RemoteRef": "HEAD",
  "RemoteSha": "09b37ac7e2defda0903a8aedaa56fb0be37cc1f3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-23 07:54:47 UTC",
    "User": "root"
  },
  "Author": "Tiago Monteiro-Henriques [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-4206-0699>),\nJorge Orestes Cerdeira [aut] (ORCID:\n<https://orcid.org/0000-0002-3814-7660>),\nFundação para a Ciência e a Tecnologia, Portugal [fnd]\n(<https://www.fct.pt/>)",
  "Maintainer": "Tiago Monteiro-Henriques <tmh.dev@icloud.com>",
  "MD5sum": "ec4cf762245191016b631a9149634c98",
  "_user": "tiagomonteirohenriques",
  "_type": "src",
  "_file": "diffval_1.2.0.9001.tar.gz",
  "_fileid": "6356d08ed8d2642c903f80fd04e9d21291852ce2a31033b7ac458471588527d6",
  "_filesize": 261167,
  "_sha256": "6356d08ed8d2642c903f80fd04e9d21291852ce2a31033b7ac458471588527d6",
  "_created": "2026-05-23T07:54:47.000Z",
  "_published": "2026-05-23T07:57:53.910Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77507627152,
      "time": 113,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7175458533"
    },
    {
      "job": 77507627150,
      "time": 101,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7175457469"
    },
    {
      "job": 77507627158,
      "time": 146,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7175459566"
    },
    {
      "job": 77507627156,
      "time": 159,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7175460435"
    },
    {
      "job": 77507514799,
      "time": 138,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7175447607"
    },
    {
      "job": 77507627130,
      "time": 120,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7175459175"
    },
    {
      "job": 77507627151,
      "time": 71,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7175454621"
    },
    {
      "job": 77507627153,
      "time": 79,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7175455513"
    },
    {
      "job": 77507627138,
      "time": 68,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7175454340"
    }
  ],
  "_buildurl": "https://github.com/r-universe/tiagomonteirohenriques/actions/runs/26327410554",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://gitlab.com/point-veg/diffval",
  "_commit": {
    "id": "09b37ac7e2defda0903a8aedaa56fb0be37cc1f3",
    "author": "CITAB-UTAD <tiagomonteirohenriques@gmail.com>",
    "committer": "CITAB-UTAD <tiagomonteirohenriques@gmail.com>",
    "message": "Updated website\n",
    "time": 1763987447
  },
  "_maintainer": {
    "name": "Tiago Monteiro-Henriques",
    "email": "tmh.dev@icloud.com",
    "login": "tiagomonteirohenriques",
    "description": "",
    "uuid": 95486281,
    "orcid": "0000-0002-4206-0699"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "parallel",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "gurobi",
      "role": "Suggests"
    },
    {
      "package": "utils",
      "role": "Suggests"
    }
  ],
  "_owner": "gitlab-point-veg",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-43",
      "n": 25
    },
    {
      "week": "2025-48",
      "n": 4
    }
  ],
  "_tags": [
    {
      "name": "v1.2.0",
      "date": "2025-10-22"
    }
  ],
  "_userbio": {
    "uuid": 95486281,
    "type": "user",
    "name": "Tiago Monteiro-Henriques"
  },
  "_downloads": {
    "count": 277,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/diffval"
  },
  "_devurl": "https://gitlab.com/point-veg/diffval",
  "_pkgdown": "https://point-veg.gitlab.io/diffval/",
  "_searchresults": 0,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/diffval.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://gitlab.com/point-veg/diffval",
  "_realowner": "tiagomonteirohenriques",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2022-11-14"
    },
    {
      "version": "1.1.0",
      "date": "2023-03-09"
    },
    {
      "version": "1.2.0",
      "date": "2025-10-22"
    }
  ],
  "_exports": [
    "bigdata_tdv",
    "explore_tabulation",
    "identical_partition",
    "internal_assignment",
    "optim_tdv_gurobi_k_2",
    "optim_tdv_hill_climb",
    "optim_tdv_simul_anne",
    "partition_tdv_grasp",
    "partition_tdv_grdtp",
    "tabulation",
    "tdv"
  ],
  "_datasets": [
    {
      "name": "taxus_bin",
      "title": "_Taxus baccata_ forests",
      "object": "taxus_bin",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "EST03",
        "EST04",
        "EST05",
        "GER12",
        "GER17",
        "GER19",
        "GER20",
        "GER21",
        "GER22",
        "GER23",
        "GER24",
        "GER25",
        "GER26",
        "GER27",
        "LE01",
        "LE02",
        "LE03",
        "LE04",
        "LE05",
        "LE06",
        "LE07",
        "LE09",
        "LU01",
        "LU02",
        "LU03",
        "LU04",
        "OR01",
        "OR02",
        "OR03",
        "SAN01",
        "SAN02",
        "SAN03",
        "SAN04"
      ],
      "rows": 209,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "bigdata_tdv",
      "title": "The Total Differential Value of a big phytosociological data set",
      "topics": [
        "bigdata_tdv"
      ]
    },
    {
      "page": "explore_tabulation",
      "title": "Interactively explore a tabulation of a phytosociological matrix",
      "topics": [
        "explore_tabulation"
      ]
    },
    {
      "page": "identical_partition",
      "title": "Do the vectors represent the same k-partition?",
      "topics": [
        "identical_partition"
      ]
    },
    {
      "page": "internal_assignment",
      "title": "Check the internal assignment of a given classification",
      "topics": [
        "internal_assignment"
      ]
    },
    {
      "page": "optim_tdv_gurobi_k_2",
      "title": "Total Differential Value optimization using Gurobi",
      "topics": [
        "optim_tdv_gurobi_k_2"
      ]
    },
    {
      "page": "optim_tdv_hill_climb",
      "title": "Total Differential Value optimization using Hill-climbing algorithms",
      "topics": [
        "optim_tdv_hill_climb"
      ]
    },
    {
      "page": "optim_tdv_simul_anne",
      "title": "Total Differential Value optimization using a Simulated Annealing (and GRASP) algorithm(s)",
      "topics": [
        "optim_tdv_simul_anne"
      ]
    },
    {
      "page": "partition_tdv_GRASP",
      "title": "Obtain a partition using a GRASP algorithm",
      "topics": [
        "partition_tdv_grasp"
      ]
    },
    {
      "page": "partition_tdv_GRDTP",
      "title": "Obtain a partition using a Greedy-type algorithm",
      "topics": [
        "partition_tdv_grdtp"
      ]
    },
    {
      "page": "tabulation",
      "title": "Rearrange a phytosociological table, showing differential taxa on top",
      "topics": [
        "tabulation"
      ]
    },
    {
      "page": "taxus_bin",
      "title": "_Taxus baccata_ forests",
      "topics": [
        "taxus_bin"
      ]
    },
    {
      "page": "tdv",
      "title": "The Total Differential Value of a phytosociological table",
      "topics": [
        "tdv"
      ]
    }
  ],
  "_readme": "https://gitlab.com/point-veg/diffval/raw/HEAD/README.md",
  "_rundeps": [],
  "_score": 3,
  "_indexed": true,
  "_nocasepkg": "diffval",
  "_universes": [
    "tiagomonteirohenriques",
    "gitlab-point-veg"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.2.0.9001",
      "date": "2026-05-23T07:56:39.000Z",
      "distro": "noble",
      "commit": "09b37ac7e2defda0903a8aedaa56fb0be37cc1f3",
      "fileid": "c96d4d40ecce139283f0bd90a45b814d8fdf0b7a25fcef54316e86a0693bce54",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tiagomonteirohenriques/actions/runs/26327410554"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.2.0.9001",
      "date": "2026-05-23T07:56:31.000Z",
      "distro": "noble",
      "commit": "09b37ac7e2defda0903a8aedaa56fb0be37cc1f3",
      "fileid": "f00a80f29a3b20b4261b9a99e5fb3c6956f5076eef418d4e690885b0d031dcf1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tiagomonteirohenriques/actions/runs/26327410554"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.2.0.9001",
      "date": "2026-05-23T07:56:56.000Z",
      "commit": "09b37ac7e2defda0903a8aedaa56fb0be37cc1f3",
      "fileid": "c50a8906be0ae892b217486dbe63bdd0e646079ee53b3635188bd4c449cdb018",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tiagomonteirohenriques/actions/runs/26327410554"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.2.0.9001",
      "date": "2026-05-23T07:57:01.000Z",
      "commit": "09b37ac7e2defda0903a8aedaa56fb0be37cc1f3",
      "fileid": "7aa4c6bf273579dbe4cea97a27fe1deb48ebe613c57b5a19ce1bbb0056b10f2f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tiagomonteirohenriques/actions/runs/26327410554"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.2.0.9001",
      "date": "2026-05-23T07:57:01.000Z",
      "commit": "09b37ac7e2defda0903a8aedaa56fb0be37cc1f3",
      "fileid": "4167b7add3fe96a27499a4b4bd6d7d701fac433d71f9e2f0f39f026b8ed7d1bf",
      "status": "success",
      "buildurl": "https://github.com/r-universe/tiagomonteirohenriques/actions/runs/26327410554"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.2.0.9001",
      "date": "2026-05-23T07:55:54.000Z",
      "commit": "09b37ac7e2defda0903a8aedaa56fb0be37cc1f3",
      "fileid": "374dff0ba3b2d169b4bbd8ddf7801227cc2cf31e5874c9ccb6d2bc001424fa1b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tiagomonteirohenriques/actions/runs/26327410554"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.2.0.9001",
      "date": "2026-05-23T07:56:03.000Z",
      "commit": "09b37ac7e2defda0903a8aedaa56fb0be37cc1f3",
      "fileid": "71061a312bf3af455f73338a1e1ee43c3abf9b5d0c55157ed40fb403e72442ab",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tiagomonteirohenriques/actions/runs/26327410554"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.2.0.9001",
      "date": "2026-05-23T07:55:52.000Z",
      "commit": "09b37ac7e2defda0903a8aedaa56fb0be37cc1f3",
      "fileid": "708eb34f742ca1003d5c233a69dc457119f7bb1573ddf89594706ba970e1bc22",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tiagomonteirohenriques/actions/runs/26327410554"
    }
  ]
}